Nanoscience

Elucidating the Dynamics of Polymer Transport through Nanopores using Asymmetric Salt Concentrations

Authors

Abstract

While notable progress has been made in recent years both experimentally and theoretically in understanding the highly complex dynamics of polymer capture and transport through nanopores, there remains significant disagreement between experimental observation and theoretical prediction that needs to be resolved. Asymmetric salt concentrations, where the concentrations of ions on each side of the membrane are different, can be used to enhance capture rates and prolong translocation times of electrophoretically driven polymers translocating through a nanopore from the low salt concentration reservoir, which are both attractive features for single-molecule analysis. However, since asymmetric salt concentrations affect the electrophoretic pull inside and outside the pore differently, it also offers a useful control parameter to elucidate the otherwise inseparable physics of the capture and translocation process. In this work, we attempt to paint a complete picture of the dynamics of polymer capture and translocation in both symmetric and asymmetric salt concentration conditions by reporting the dependence of multiple translocation metrics on voltage, polymer length, and salt concentration gradient. Using asymmetric salt concentration conditions, we experimentally observe the predictions of tension propagation theory, and infer the significant impact of the electric field outside the pore in capturing polymers and in altering polymer conformations prior to translocation.

Version notes

We first revised Figure 1 and large sections of the introduction to more accurately describe effects present under salt concentration gradients: modulation of electric fields, electrophoretic mobility and diffusioosmotic phenomena. More importantly, we have updated our analysis of the data presented in Figure 4, and correspondingly changed these plots and the fits to the data. Specifically, we were able to estimate the contributions of diffusio-osmosis and diffusio-phoresis to translocation times by extrapolating our measurements of translocation times under various voltages. This quantification of diffusioosmotic phenomena and the ensuing comparison to electrophoretic contributions allowed us to solidify and identify the main cause of nanopore capture and translocation modulation under salt gradients.

Content

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Supplementary material

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Supporting Information Document
Additional information regarding the non-linearity of salt-concentration and conductivity, the regime-dependent capture enhancement of linear DNA and DNA nanostructures, the different fits of translocation time and DNA length scaling, the folding statistics, the method for extracting higher-order translocation time statistics from folded translocations, the DNA-length dependence of higher order translocation time statistics, and the IV stabilization when going from SSC to ASC conditions.